Making it installabel package and switching to segmentation mode

pyproject.toml

@@ -0,0 +1,103 @@
+[build-system]
+requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "microscopy-object-detection"
+version = "1.0.0"
+description = "Desktop application for detecting and segmenting organelles in microscopy images using YOLOv8-seg"
+readme = "README.md"
+requires-python = ">=3.8"
+license = { text = "MIT" }
+authors = [{ name = "Your Name", email = "your.email@example.com" }]
+keywords = [
+    "microscopy",
+    "yolov8",
+    "object-detection",
+    "segmentation",
+    "computer-vision",
+    "deep-learning",
+]
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering :: Image Recognition",
+    "Topic :: Scientific/Engineering :: Bio-Informatics",
+    "License :: OSI Approved :: MIT License",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
+    "Programming Language :: Python :: 3.10",
+    "Programming Language :: Python :: 3.11",
+    "Operating System :: OS Independent",
+]
+
+dependencies = [
+    "ultralytics>=8.0.0",
+    "PySide6>=6.5.0",
+    "pyqtgraph>=0.13.0",
+    "numpy>=1.24.0",
+    "opencv-python>=4.8.0",
+    "Pillow>=10.0.0",
+    "PyYAML>=6.0",
+    "pandas>=2.0.0",
+    "openpyxl>=3.1.0",
+]
+
+[project.optional-dependencies]
+dev = [
+    "pytest>=7.0.0",
+    "pytest-cov>=4.0.0",
+    "black>=23.0.0",
+    "pylint>=2.17.0",
+    "mypy>=1.0.0",
+]
+
+[project.urls]
+Homepage = "https://github.com/yourusername/object_detection"
+Documentation = "https://github.com/yourusername/object_detection/blob/main/README.md"
+Repository = "https://github.com/yourusername/object_detection"
+"Bug Tracker" = "https://github.com/yourusername/object_detection/issues"
+
+[project.scripts]
+microscopy-detect = "src.cli:main"
+
+[project.gui-scripts]
+microscopy-detect-gui = "main:main"
+
+[tool.setuptools]
+package-dir = { "" = "." }
+packages = [
+    "src",
+    "src.database",
+    "src.model",
+    "src.gui",
+    "src.gui.tabs",
+    "src.gui.dialogs",
+    "src.gui.widgets",
+    "src.utils",
+]
+
+[tool.setuptools.package-data]
+src = ["database/*.sql"]
+"" = ["config/*.yaml"]
+
+[tool.black]
+line-length = 88
+target-version = ['py38', 'py39', 'py310', 'py311']
+include = '\.pyi?$'
+
+[tool.pylint.messages_control]
+max-line-length = 88
+
+[tool.mypy]
+python_version = "3.8"
+warn_return_any = true
+warn_unused_configs = true
+disallow_untyped_defs = false
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+python_files = ["test_*.py"]
+python_functions = ["test_*"]
+addopts = "-v --cov=src --cov-report=term-missing"