Update

src/utils/image_converters.py

@@ -18,7 +18,13 @@ class UT:
         self.rois = None
         if no_labels:
             self.rois = ImagejRoi.fromfile(self.roifile_fn)
-            self.stem = self.roifile_fn.stem.split("Roi-")[1]
+            print(self.roifile_fn.stem)
+            print(self.roifile_fn.parent.parts[-1])
+            if "Roi-" in self.roifile_fn.stem:
+                self.stem = self.roifile_fn.stem.split("Roi-")[1]
+            else:
+                self.stem = self.roifile_fn.parent.parts[-1]
+
         else:
             self.roifile_fn = roifile_fn / roifile_fn.parts[-1]
             self.stem = self.roifile_fn.stem
@@ -95,9 +101,7 @@ class UT:
             for i, roi in enumerate(self.rois):
                 rc = roi.subpixel_coordinates
                 if rc is None:
-                    print(
-                        f"No coordinates: {self.roifile_fn}, element {i}, out of {len(self.rois)}"
-                    )
+                    print(f"No coordinates: {self.roifile_fn}, element {i}, out of {len(self.rois)}")
                     continue
                 xmn, ymn = rc.min(axis=0)
                 xmx, ymx = rc.max(axis=0)
@@ -143,6 +147,9 @@ if __name__ == "__main__":
     )
     args = parser.parse_args()
 
+    # print(args)
+    # aa
+
     for path in args.input:
         print("Path:", path)
         if not args.no_labels:
@@ -152,6 +159,7 @@ if __name__ == "__main__":
 
         else:
             for rfn in Path(path).glob("*.zip"):
+                # if Path(path).suffix == ".zip":
                 print("Roi FN:", rfn)
                 ut = UT(rfn, args.no_labels)
                 ut.export_rois(args.output, class_index=0)