[build-system]
requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[project]
name = "microscopy-object-detection"
version = "1.0.0"
description = "Desktop application for detecting and segmenting organelles in microscopy images using YOLOv8-seg"
readme = "README.md"
requires-python = ">=3.8"
license = { text = "MIT" }
authors = [{ name = "Your Name", email = "your.email@example.com" }]
keywords = [
    "microscopy",
    "yolov8",
    "object-detection",
    "segmentation",
    "computer-vision",
    "deep-learning",
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Topic :: Scientific/Engineering :: Image Recognition",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "License :: OSI Approved :: MIT License",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Operating System :: OS Independent",
]

dependencies = [
    "ultralytics>=8.0.0",
    "PySide6>=6.5.0",
    "pyqtgraph>=0.13.0",
    "numpy>=1.24.0",
    "opencv-python>=4.8.0",
    "Pillow>=10.0.0",
    "PyYAML>=6.0",
    "pandas>=2.0.0",
    "openpyxl>=3.1.0",
]

[project.optional-dependencies]
dev = [
    "pytest>=7.0.0",
    "pytest-cov>=4.0.0",
    "black>=23.0.0",
    "pylint>=2.17.0",
    "mypy>=1.0.0",
]

[project.urls]
Homepage = "https://github.com/yourusername/object_detection"
Documentation = "https://github.com/yourusername/object_detection/blob/main/README.md"
Repository = "https://github.com/yourusername/object_detection"
"Bug Tracker" = "https://github.com/yourusername/object_detection/issues"

[project.scripts]
microscopy-detect = "src.cli:main"

[project.gui-scripts]
microscopy-detect-gui = "main:main"

[tool.setuptools]
package-dir = { "" = "." }
packages = [
    "src",
    "src.database",
    "src.model",
    "src.gui",
    "src.gui.tabs",
    "src.gui.dialogs",
    "src.gui.widgets",
    "src.utils",
]

[tool.setuptools.package-data]
src = ["database/*.sql"]
"" = ["config/*.yaml"]

[tool.black]
line-length = 88
target-version = ['py38', 'py39', 'py310', 'py311']
include = '\.pyi?$'

[tool.pylint.messages_control]
max-line-length = 88

[tool.mypy]
python_version = "3.8"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = false

[tool.pytest.ini_options]
testpaths = ["tests"]
python_files = ["test_*.py"]
python_functions = ["test_*"]
addopts = "-v --cov=src --cov-report=term-missing"