deconv-test/plot.py

'''plotting the MSE and SSIM against the number of iterations'''

import numpy as np
import matplotlib.pyplot as plt
import h5py
import glob
import argparse
import csv
import re

from scipy.signal import find_peaks

parser = argparse.ArgumentParser()
parser.add_argument('--infile', type = str, required = True, help = 'file name of the .h5 file for names')
parser.add_argument('--data', type = str, required = True, help = "write only the part of 1 file name before the _(nr-s).npy; files for creating the plots")
parser.add_argument('--images', type = str, default = "mse_mssim", help = "naming the output images, default = mse_mssim")
parser.add_argument('-q','--squared', action = argparse.BooleanOptionalAction, help = "squares the intensity values, otherwise normal values")
parser.add_argument('-sp', '--sigma_plots', action = argparse.BooleanOptionalAction, help = 'shows the plots, where all intensity values of a sigma value are on one plot')

args = parser.parse_args()

group_to_datasets = {}

with h5py.File(args.infile, 'r') as hdf5_file:
    for group_name in hdf5_file: # loop üle grupi nimede
        group = hdf5_file[group_name] #salvestab grupi nime
        if isinstance(group, h5py.Group):
            datasets = [] #kui grupi nimi on h5py.Group nimi siis
            for ds_name in group: #vaatab üle kõik datasetid grupi sees
                if isinstance(group[ds_name], h5py.Dataset): # kui vastab ds nimele
                    datasets.append(ds_name) # appenditakse
            group_to_datasets[group_name] = datasets # iga grupile apenditakse tema oma ds

group_names = list(group_to_datasets.keys()) # has all the groups which are different inensitires and 
# all the datasets names are there with sigma and minimum but i only use sigma so the rest are not used at all 
labels = group_to_datasets.get(group_names[0]) # gets all the groups labels in a list

npy_files = sorted(glob.glob(f"{args.data}*.npy"))

if args.sigma_plots:
    column_accumulators = None

    for filename in npy_files:
        data = np.load(filename)
        iterations = data[:,0]
        cols_rem = data.shape[1] - 1
        cols = cols_rem // 2
        mses = data[:, 1:1+cols]
        #mssim = data[:, 1+cols:1+2*cols]

        if column_accumulators is None:
            column_accumulators = [[] for _ in range(mses.shape[1])]

        for i in range(mses.shape[1]):
            column_accumulators[i].append(mses[:, i])

    column_vars = [np.column_stack(col) for col in column_accumulators]


    flat_numbers = np.array([float(n) for s in group_names for n in re.findall(r"-?\d+\.?\d*", s)])
    flat_numbers[flat_numbers < 1] = 1
    flat_numbers = np.square(flat_numbers)

    for i, col in enumerate(column_vars):
        plt.figure(figsize=(15,9))
        for j in range(col.shape[1]):
            if args.squared:
                plt.plot(col[:, j] * flat_numbers[j], label = group_names[j])
            else:
                plt.plot(col[:, j], label = group_names[j])
        plt.title(f"{labels[i]}")
        plt.legend()
    #plt.show()


with open('mse.csv', 'w', newline='') as csvfile, open('mssim.csv', 'w', newline='') as f2:
    writer = csv.writer(csvfile)
    writer2 = csv.writer(f2)

    header = False
    
    for group_name, filename in zip(group_names, npy_files): #üle kõigi mürade
        labels = group_to_datasets[group_name]

        if not header:
            writer.writerow([''] + labels)
            writer2.writerow([''] + labels)
            header = True
        
        row = [group_name]
        row2 = [group_name]
        
        data = np.load(filename)
        iterations = data[:,0]
        
        cols_rem = data.shape[1] - 1
        cols = cols_rem // 2
        mses = data[:, 1:1+cols]
        mssim = data[:, 1+cols:1+2*cols]

        #np.set_printoptions(threshold=np.inf)

        fig, ax = plt.subplots(2, 1, figsize = (15,9))
        ax0 = ax[0]
        ax1 = ax[1]

        for i in range(mses.shape[1]): #üle kõigi sigmade
            ax0.plot(iterations, mses[:, i], label = labels[i])
            row.append(np.min(mses[:,i]))

        ax0.set_xlabel('iterations')
        ax0.set_ylabel('mse')
        #ax0.set_yscale('log')
        ax0.set_title(f'mse change - {group_name}')
        ax0.legend()
        ax0.grid(False)

        for i in range(mssim.shape[1]):
            ax1.plot(iterations, mssim[:, i], label = labels[i])
            row2.append(np.max(mssim[:,i]))

        ax1.set_xlabel('iterations')
        ax1.set_ylabel('mssim')
        ax1.set_title(f'mssim - {group_name}')
        ax1.legend()
        ax1.grid(False)

        writer.writerow(row)
        writer2.writerow(row2)

        plt.tight_layout()
        plt.savefig(f"{args.images}_{group_name}.png")

plt.show()