converting .h5 files

scaling_converter.py

@@ -0,0 +1,26 @@
+"scaling the images, so that the maximums would be the same"
+
+import numpy as np
+import h5py
+import argparse
+
+parser = argparse.ArgumentParser()
+parser.add_argument("--infile", type = str, help = "input file with all the calculated images")
+parser.add_argument('--converted', type = str, help = 'name of the converted data file')
+
+args = parser.parse_args()
+
+
+with h5py.File(args.infile, 'r') as input_images, h5py.File(args.converted, 'w') as converter:
+    for name in input_images:
+        if isinstance(input_images[name], h5py.Group):
+            input_images.copy(name, converter)
+
+    def conv(name, obj):
+        if isinstance(obj, h5py.Dataset):
+            data = obj[:]
+            mod = data / np.max(data) * 100
+            obj[...] = mod
+
+    converter.visititems(conv)
+