ralf/Calcium_Model
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ralf 2024-08-06 10:39:34 +03:00
parent f4169b17b8
commit 13033f6936
3 changed files with 11 additions and 2 deletions
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6
Model.py
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@ -362,7 +362,10 @@ class Model:
) )
r.set_initial_value(initial_values, times[0]) r.set_initial_value(initial_values, times[0])
states = np.array([[0.0] * times.size] * len(initial_values)) #states = np.array([[0.0] * times.size] * len(initial_values))
#states[:, 0] = initial_values
states = np.zeros((len(initial_values), times.size))
states[:, 0] = initial_values states[:, 0] = initial_values
for i, t in enumerate(times[1:]): for i, t in enumerate(times[1:]):
@ -414,6 +417,7 @@ class Model:
ax4.set_ylabel(r"$\mu mol/3l$") ax4.set_ylabel(r"$\mu mol/3l$")
plt.show() plt.show()
return states, V
if __name__ == "__main__": if __name__ == "__main__":

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__pycache__/Model.cpython-311.pyc
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7
fitter.py
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@ -149,7 +149,12 @@ class Fitter:
model.K_pc_half = K_pc_half model.K_pc_half = K_pc_half
model.tau_xfer = tau_xfer model.tau_xfer = tau_xfer
model.solve(times=self.time_points) states, V = model.solve(
initial_values=self.initial_values,
tspan=self.tspan,
dt=self.dt,
times=self.time_points
)
_calc_curr = model.calculated_current() _calc_curr = model.calculated_current()
calculated_current = self.convolve_current(_calc_curr, tau=tau_RC) + offset calculated_current = self.convolve_current(_calc_curr, tau=tau_RC) + offset