functioning data organizer for group fitting .h5 file

This commit is contained in:
ralf 2024-07-25 10:48:39 +03:00
parent c2fcdc0a24
commit 59d5efe418

33
h5_data_organizer.py Normal file
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import h5py
import pandas as pd
file = "ltcc_current.h5"
# Dict to hold DFs 'sex', 'iso' & 'spid'
dfs_by_sex_iso_spid = {}
with h5py.File(file, "r") as h5_file:
for eid in h5_file.keys():
attributes = h5_file[eid].attrs
sex = attributes.get("sex")
iso = attributes.get("iso")
spid = attributes.get("spid")
# Creates a unique key for dict based on sex, iso & spid
key = f"{sex}_{iso}_{spid}"
if key not in dfs_by_sex_iso_spid:
dfs_by_sex_iso_spid[key] = pd.DataFrame()
row_data = {"experiment_id": eid, "sex": sex, "iso": iso, "spid": spid}
temp_df = pd.DataFrame([row_data])
# Append the DF to the appropriate dict entry
dfs_by_sex_iso_spid[key] = pd.concat(
[dfs_by_sex_iso_spid[key], temp_df], ignore_index=True
)
for key, df in dfs_by_sex_iso_spid.items():
print(f"DataFrame for {key}:")
print(df)
print()