Calcium_Model/Data.py

25 lines
842 B
Python

import numpy as np
import h5py
from scipy.interpolate import interp1d
class Data:
def __init__(self, filename, group_key):
self.filename = filename
self.datasets = []
with h5py.File(self.filename, "r") as h5:
if 1:
print(f"Atribuudid grupis '{group_key}'")
grp = h5[group_key]
self.current = grp["current_raw"][()] / grp.attrs["c_mem"]
self.current_t = grp["current_t"][()]
self.ECal = grp.attrs["vrev"]
self.gGaL = grp.attrs["gmax"]
self.eid = group_key
def get_current_slice(self, times: np.ndarray):
interpolator = interp1d(self.current_t, self.current,
fill_value="extrapolate")
return interpolator(times)