Marko Vendelin markov
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  • Joined on 2022-10-24
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markov pushed to main at hamed/Bayesian-fcs 2024-02-20 16:54:32 +02:00
7a78670dd6 Allow to restrict number of saved positions, fixes #45
markov opened issue hamed/Bayesian-fcs#49 2024-02-20 15:29:23 +02:00
seed looks to be not helping in reproducible random numbers generation
markov pushed to main at hamed/Bayesian-fcs 2024-02-20 14:51:00 +02:00
83987defbd Drop unneeded dimension in positions
markov opened issue hamed/Bayesian-fcs#48 2024-02-20 12:00:04 +02:00
Move repository to software/fitsa
markov pushed to main at hamed/Bayesian-fcs 2024-02-20 11:59:38 +02:00
46f7bd8c27 Fix location of legend in the plot
markov commented on issue hamed/Bayesian-fcs#46 2024-02-20 08:44:05 +02:00
Allow to limit box size in fit

fixed

markov closed issue hamed/Bayesian-fcs#46 2024-02-20 08:44:05 +02:00
Allow to limit box size in fit
markov pushed to main at hamed/Bayesian-fcs 2024-02-20 08:41:40 +02:00
0a0c829c3c Allow longer lines in file format
6f5e1ad3f4 Prefer command line given box size for particle prior to the one in HDF5
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markov opened issue hamed/Bayesian-fcs#47 2024-02-20 08:35:20 +02:00
Generate should show concentration of the molecules
markov opened issue hamed/Bayesian-fcs#46 2024-02-20 08:19:39 +02:00
Allow to limit box size in fit
markov opened issue hamed/Bayesian-fcs#45 2024-02-19 21:22:36 +02:00
Allow to save limited number of trajectories
markov opened issue hamed/Bayesian-fcs#44 2024-02-19 08:39:48 +02:00
Implement motion from the closest location in PyMC
markov pushed to main at divya/energy_transfer 2024-02-07 18:10:07 +02:00
900c539179 Fixing some bugs
markov pushed to main at hamed/Bayesian-fcs 2024-02-07 10:38:32 +02:00
67aa8ec43c Sync priors for numpyro and pymc
522fea9d14 Make priors for multiple particles different
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markov pushed to main at hamed/Bayesian-fcs 2024-02-07 08:30:42 +02:00
de979d3b48 Drop PyQt6 from requirements
markov created branch steady-state in divya/energy_transfer 2024-02-06 18:06:58 +02:00
markov pushed to steady-state at divya/energy_transfer 2024-02-06 18:06:58 +02:00
88c419d716 Add steady state checks
markov pushed to main at mari/5-state-XB-model 2024-01-29 20:22:58 +02:00
a7b0c66e5d Add gitignore
7f32313a8c Add missing ODE solver
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markov commented on issue divya/energy_transfer#1 2023-12-15 10:18:22 +02:00
Feedback

vo2 = v*0.2 why is that?

when referring to experimental data, please specify paper and figure / subplot.

exp_data = exp_data * 806 - this is not good. instead, make a var with CS…

markov commented on issue divya/energy_transfer#1 2023-12-15 10:11:49 +02:00
Feedback

usually, we use micromol / min / g prot. please use this unit for rates and then convert to nmol O2 when needed for comparison.

already have question regarding PK_vmax - not sure regarding the…