fixed fitter and model
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06a2b217d4
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2
Model.py
2
Model.py
@ -445,5 +445,5 @@ if __name__ == "__main__":
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times = np.arange(0, 1000, 1.0)
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states, V = model.solve(initial_values=initial_values, tspan=[0, 1000], dt=1.0, times=times)
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model.plot_results(times, states, V)
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Binary file not shown.
@ -61,16 +61,13 @@ class Fitter:
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model.K_pc_half = K_pc_half
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model.tau_xfer = tau_xfer
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model.solve(
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states, V = model.solve(
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times=self.time_points,
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tspan=self.tspan,
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dt=self.dt,
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initial_values=self.initial_values,
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)
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states = self.initial_values
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t = self.time_points
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V = model.mem_potential(t)
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_calc_curr = model.calculated_current(states, V)
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calculated_current = (
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self.convolve_current(_calc_curr, tau=tau_RC)[self.current_time_indecies]
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@ -124,8 +121,8 @@ class Fitter:
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init_parameters,
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bounds=bounds,
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xtol=1e-10,
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ftol=1e-12,
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verbose=2,
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ftol=1e-10,
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# verbose=2,
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)
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print()
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