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fixed fitter and model

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ralf 2024-08-19 14:52:18 +03:00
parent 06a2b217d4
commit 5b630571b3
3 changed files with 4 additions and 7 deletions
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2
Model.py
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@ -445,5 +445,5 @@ if __name__ == "__main__":
times = np.arange(0, 1000, 1.0) times = np.arange(0, 1000, 1.0)
states, V = model.solve(initial_values=initial_values, tspan=[0, 1000], dt=1.0, times=times) states, V = model.solve(initial_values=initial_values, tspan=[0, 1000], dt=1.0, times=times)
model.plot_results(times, states, V) model.plot_results(times, states, V)

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__pycache__/Model.cpython-311.pyc
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9
fitter.py
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@ -61,16 +61,13 @@ class Fitter:
model.K_pc_half = K_pc_half model.K_pc_half = K_pc_half
model.tau_xfer = tau_xfer model.tau_xfer = tau_xfer
model.solve( states, V = model.solve(
times=self.time_points, times=self.time_points,
tspan=self.tspan, tspan=self.tspan,
dt=self.dt, dt=self.dt,
initial_values=self.initial_values, initial_values=self.initial_values,
) )
states = self.initial_values
t = self.time_points
V = model.mem_potential(t)
_calc_curr = model.calculated_current(states, V) _calc_curr = model.calculated_current(states, V)
calculated_current = ( calculated_current = (
self.convolve_current(_calc_curr, tau=tau_RC)[self.current_time_indecies] self.convolve_current(_calc_curr, tau=tau_RC)[self.current_time_indecies]
@ -124,8 +121,8 @@ class Fitter:
init_parameters, init_parameters,
bounds=bounds, bounds=bounds,
xtol=1e-10, xtol=1e-10,
ftol=1e-12, ftol=1e-10,
verbose=2, # verbose=2,
) )
print() print()